package org.tcdb.biotools;

import org.biojava3.core.sequence.ProteinSequence;
import org.tcdb.biotools.util.SequenceRetrieval;

/**
 * Hello world!
 *
 */
public class Biotools 
{
    public static void main( String[] args )
    {
        System.out.println( "Welcome to Java Biotools! \nExtended utility apps for bioinformatics tasks, built on the Biojava libraries." );
        System.out.println( "For bugs, comments and information, contact Erik Clarke - eclarke@ucsd.edu");
        System.out.println( "Academic use only. By the Saier Lab Bioinformatics Group @ UC San Diego.");
        
        try {
			ExtendedGlobalAlignment ega = new ExtendedGlobalAlignment(5000, "2.A.1.1", "9.A.2");
			ega.executeComparison();
		} catch (Exception e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		}
    }
}
